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Lj3g3v2888300.1

Overview

Field Value
Gene ID Lj3g3v2888300
Transcript ID Lj3g3v2888300.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] gi|502165377|ref|XP_004513552.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF47473
9 105 97 9.72E-13
IPR011992
PANTHER
PTHR23050:SF170
12 114 103 6.30E-55 –
PANTHER
PTHR23050
12 114 103 6.30E-55 –
Gene3D
G3DSA:1.10.238.10
14 98 85 5.30E-13
IPR011992
Pfam
PF13833
46 97 52 1.70E-18
IPR002048
ProSiteProfiles
PS50222
66 101 36 10.692
IPR002048
SMART
SM00054
70 98 29 0.0051
IPR002048
ProSitePatterns
PS00018
79 91 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v2888300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2888300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.