Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v2926280.1

Overview

Field Value
Gene ID Lj3g3v2926280
Transcript ID Lj3g3v2926280.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 381 381 – –
PANTHER
PTHR32499
1 383 383 9.30E-266 –
PANTHER
PTHR32499:SF3
1 383 383 9.30E-266 –
ProSiteProfiles
PS50213
1 118 118 14.698
IPR000782
Pfam
PF02469
6 120 115 4.70E-17
IPR000782
SUPERFAMILY
SSF82153
7 121 115 3.01E-17
IPR000782
Gene3D
G3DSA:2.30.180.10
11 120 110 2.10E-17
IPR000782
SMART
SM00554
16 121 106 2.60E-13
IPR000782
MobiDBLite
mobidb-lite
141 193 53 – –
SUPERFAMILY
SSF82153
181 348 168 2.62E-19
IPR000782
ProSiteProfiles
PS50213
202 330 129 10.359
IPR000782
Gene3D
G3DSA:2.30.180.10
208 348 141 3.80E-09
IPR000782
Pfam
PF02469
227 347 121 1.80E-07
IPR000782
SMART
SM00554
243 348 106 1.30E-15
IPR000782
MobiDBLite
mobidb-lite
346 371 26 – –
Phobius
TRANSMEMBRANE
382 399 18 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
400 400 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj3g3v2926280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2926280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.