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Lj3g3v3081260.1

Overview

Field Value
Gene ID Lj3g3v3081260
Transcript ID Lj3g3v3081260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cicer arietinum] gi|502145480|ref|XP_004506047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11353:SF11
1 586 586 0 –
PANTHER
PTHR11353
1 586 586 0 –
MobiDBLite
mobidb-lite
1 27 27 – –
Gene3D
G3DSA:1.10.560.10
38 241 204 2.10E-35
IPR027413
Hamap
MF_00600
48 585 538 36.262
IPR001844
TIGRFAM
TIGR02348
49 571 523 1.80E-219
IPR001844
CDD
cd03344
50 569 520 0 –
SUPERFAMILY
SSF48592
58 183 126 2.08E-65 –
Pfam
PF00118
69 570 502 6.10E-95
IPR002423
PRINTS
PR00298
73 99 27 1.30E-56
IPR001844
PRINTS
PR00298
128 155 28 1.30E-56
IPR001844
SUPERFAMILY
SSF54849
182 247 66 2.52E-15 –
SUPERFAMILY
SSF52029
229 421 193 6.28E-72
IPR027409
Gene3D
G3DSA:3.50.7.10
242 412 171 1.90E-78
IPR027409
PRINTS
PR00298
313 336 24 1.30E-56
IPR001844
PRINTS
PR00298
395 420 26 1.30E-56
IPR001844
SUPERFAMILY
SSF54849
408 453 46 7.78E-05 –
Gene3D
G3DSA:1.10.560.10
413 564 152 3.10E-36
IPR027413
PRINTS
PR00298
443 464 22 1.30E-56
IPR001844
ProSitePatterns
PS00296
450 461 12 –
IPR018370
SUPERFAMILY
SSF48592
454 568 115 2.08E-65 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0042026
Biological process Protein refolding The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj3g3v3081260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3081260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.