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Lj3g3v3086070.1

Overview

Field Value
Gene ID Lj3g3v3086070
Transcript ID Lj3g3v3086070.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-galactosidase 8-like [Glycine max] gi|356539454|ref|XP_003538213.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23421:SF58
1 18 18 1.40E-112 –
PANTHER
PTHR23421
1 18 18 1.40E-112
IPR001944
SUPERFAMILY
SSF49785
1 23 23 7.37E-17
IPR008979
Gene3D
G3DSA:2.60.120.260
2 82 81 6.10E-08
IPR008979
PANTHER
PTHR23421:SF58
43 185 143 1.40E-112 –
PANTHER
PTHR23421
43 185 143 1.40E-112
IPR001944
SUPERFAMILY
SSF49785
51 109 59 7.37E-17
IPR008979
ProSiteProfiles
PS50228
114 200 87 16.279
IPR000922
Pfam
PF02140
122 199 78 1.60E-20
IPR000922

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0030246
Molecular function Carbohydrate binding Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3086070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3086070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.