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Lj3g3v3188580.4

Overview

Field Value
Gene ID Lj3g3v3188580
Transcript ID Lj3g3v3188580.4
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WUSCHEL-related homeobox 2-like [Glycine max] gi|356541244|ref|XP_003539089.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 – –
PANTHER
PTHR24326
20 105 86 6.60E-36 –
PANTHER
PTHR24326:SF203
20 105 86 6.60E-36 –
ProSiteProfiles
PS50071
28 93 66 11.029
IPR001356
SMART
SM00389
30 97 68 1.10E-06
IPR001356
Pfam
PF00046
33 92 60 2.70E-18
IPR001356
SUPERFAMILY
SSF46689
33 99 67 2.27E-12
IPR009057
Gene3D
G3DSA:1.10.10.60
33 92 60 1.30E-08
IPR009057
CDD
cd00086
34 94 61 6.53E-07 –
MobiDBLite
mobidb-lite
218 260 43 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 29

Expression data

Expression pattern

Expression pattern of Lj3g3v3188580.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3188580.4, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.