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Lj3g3v3336250.1

Overview

Field Value
Gene ID Lj3g3v3336250
Transcript ID Lj3g3v3336250.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing protein At5g60130-like [Glycine max] gi|356541131|ref|XP_003539036.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM01019
16 98 83 0.076
IPR003340
Gene3D
G3DSA:2.40.330.10
19 100 82 5.10E-12
IPR015300
SUPERFAMILY
SSF101936
19 103 85 1.96E-11
IPR015300
Pfam
PF02362
22 97 76 1.20E-07
IPR003340
ProSiteProfiles
PS50863
23 98 76 10.828
IPR003340
CDD
cd10017
23 96 74 2.14E-06
IPR003340
PANTHER
PTHR31920
137 316 180 5.90E-28 –
PANTHER
PTHR31920:SF15
137 316 180 5.90E-28 –
Gene3D
G3DSA:2.40.330.10
157 258 102 2.50E-16
IPR015300
SUPERFAMILY
SSF101936
159 258 100 5.49E-16
IPR015300
ProSiteProfiles
PS50863
161 256 96 11.152
IPR003340
CDD
cd10017
161 253 93 7.73E-12
IPR003340
Pfam
PF02362
163 255 93 3.40E-13
IPR003340
SMART
SM01019
163 256 94 1.60E-09
IPR003340
MobiDBLite
mobidb-lite
269 374 106 – –
SUPERFAMILY
SSF48371
272 315 44 4.32E-05
IPR016024

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj3g3v3336250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3336250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.