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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3652410 |
| Transcript ID | Lj3g3v3652410.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max] gi|356542909|ref|XP_003539907.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 433 | 432 | 1.90E-280 | – | |
| PANTHER | 2 | 433 | 432 | 1.90E-280 | – | |
| MobiDBLite | 62 | 131 | 70 | – | – | |
| ProSiteProfiles | 215 | 242 | 28 | 13.206 | ||
| SMART | 217 | 241 | 25 | 9.90E-04 | ||
| SUPERFAMILY | 218 | 240 | 23 | 2.49E-05 | ||
| Gene3D | 219 | 240 | 22 | 6.80E-05 | ||
| Pfam | 220 | 240 | 21 | 3.90E-05 | ||
| Gene3D | 344 | 428 | 85 | 2.40E-09 | ||
| ProSiteProfiles | 348 | 424 | 77 | 9.235 | ||
| SMART | 349 | 419 | 71 | 3.90E-07 | ||
| CDD | 350 | 419 | 70 | 1.30E-40 | – | |
| SUPERFAMILY | 359 | 433 | 75 | 3.53E-11 | ||
| Pfam | 360 | 404 | 45 | 2.30E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj3g3v3652410.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3652410.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.