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Lj4g3v0071090.1

Overview

Field Value
Gene ID Lj4g3v0071090
Transcript ID Lj4g3v0071090.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methyltransferase PMT19-like [Solanum lycopersicum] gi|460406515|ref|XP_004248708.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 26 26 – –
Phobius
TRANSMEMBRANE
27 49 23 – –
TMHMM
TMhelix
27 49 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
50 446 397 – –
MobiDBLite
mobidb-lite
108 129 22 – –
PANTHER
PTHR10108:SF720
161 446 286 4.70E-147 –
PANTHER
PTHR10108
161 446 286 4.70E-147 –
Pfam
PF03141
281 391 111 5.80E-07
IPR004159
SUPERFAMILY
SSF53335
293 420 128 1.34E-13
IPR029063
CDD
cd02440
297 397 101 1.70E-04 –
Gene3D
G3DSA:3.40.50.150
297 399 103 8.80E-10
IPR029063
Coils
Coil
446 446 1 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v0071090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0071090.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.