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Lj4g3v0217750.2

Overview

Field Value
Gene ID Lj4g3v0217750
Transcript ID Lj4g3v0217750.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11254:SF291
1 374 374 0 –
PANTHER
PTHR11254
1 374 374 0 –
MobiDBLite
mobidb-lite
230 272 43 – –
PANTHER
PTHR11254
399 974 576 0 –
PANTHER
PTHR11254:SF291
399 974 576 0 –
SUPERFAMILY
SSF56204
596 966 371 1.57E-118
IPR000569
CDD
cd00078
612 972 361 1.73E-153
IPR000569
SMART
SM00119
631 974 344 7.70E-150
IPR000569
ProSiteProfiles
PS50237
633 974 342 105.225
IPR000569
Pfam
PF00632
663 973 311 1.60E-88
IPR000569
Gene3D
G3DSA:3.30.2160.10
734 817 84 1.90E-24 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj4g3v0217750.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0217750.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.