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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0336020 |
| Transcript ID | Lj4g3v0336020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356510721|ref|XP_003524084.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 242 | 242 | 1.10E-137 | ||
| PANTHER | 1 | 242 | 242 | 1.10E-137 | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Pfam | 13 | 154 | 142 | 3.30E-14 | ||
| Phobius | 14 | 34 | 21 | – | – | |
| Phobius | 35 | 45 | 11 | – | – | |
| TMHMM | 44 | 63 | 20 | – | – | |
| Phobius | 46 | 63 | 18 | – | – | |
| SUPERFAMILY | 47 | 156 | 110 | 3.53E-07 | – | |
| Phobius | 64 | 74 | 11 | – | – | |
| Phobius | 75 | 94 | 20 | – | – | |
| TMHMM | 75 | 94 | 20 | – | – | |
| Phobius | 95 | 99 | 5 | – | – | |
| Phobius | 100 | 126 | 27 | – | – | |
| TMHMM | 104 | 126 | 23 | – | – | |
| Phobius | 127 | 137 | 11 | – | – | |
| TMHMM | 138 | 156 | 19 | – | – | |
| Phobius | 138 | 156 | 19 | – | – | |
| Phobius | 157 | 188 | 32 | – | – | |
| TMHMM | 189 | 208 | 20 | – | – | |
| Phobius | 189 | 208 | 20 | – | – | |
| Phobius | 209 | 219 | 11 | – | – | |
| TMHMM | 220 | 239 | 20 | – | – | |
| Phobius | 220 | 239 | 20 | – | – | |
| Phobius | 240 | 242 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0336020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0336020.1, powered by CORGI.
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