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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0336190 |
| Transcript ID | Lj4g3v0336190.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: auxin-induced protein 5NG4-like [Glycine max] gi|356528066|ref|XP_003532626.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 358 | 358 | 5.60E-218 | ||
| PANTHER | 1 | 358 | 358 | 5.60E-218 | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| Pfam | 12 | 154 | 143 | 7.90E-12 | ||
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 14 | 34 | 21 | – | – | |
| Phobius | 35 | 45 | 11 | – | – | |
| TMHMM | 45 | 63 | 19 | – | – | |
| Phobius | 46 | 63 | 18 | – | – | |
| SUPERFAMILY | 47 | 155 | 109 | 5.75E-06 | – | |
| Phobius | 64 | 74 | 11 | – | – | |
| Phobius | 75 | 97 | 23 | – | – | |
| TMHMM | 76 | 98 | 23 | – | – | |
| Phobius | 98 | 102 | 5 | – | – | |
| TMHMM | 103 | 125 | 23 | – | – | |
| Phobius | 103 | 126 | 24 | – | – | |
| Phobius | 127 | 137 | 11 | – | – | |
| Phobius | 138 | 156 | 19 | – | – | |
| TMHMM | 138 | 156 | 19 | – | – | |
| Phobius | 157 | 191 | 35 | – | – | |
| Phobius | 192 | 210 | 19 | – | – | |
| TMHMM | 192 | 210 | 19 | – | – | |
| Pfam | 193 | 331 | 139 | 7.70E-14 | ||
| Phobius | 211 | 221 | 11 | – | – | |
| Phobius | 222 | 242 | 21 | – | – | |
| TMHMM | 222 | 244 | 23 | – | – | |
| Phobius | 243 | 261 | 19 | – | – | |
| SUPERFAMILY | 255 | 336 | 82 | 1.12E-10 | – | |
| TMHMM | 259 | 281 | 23 | – | – | |
| Phobius | 262 | 281 | 20 | – | – | |
| Phobius | 282 | 287 | 6 | – | – | |
| TMHMM | 286 | 308 | 23 | – | – | |
| Phobius | 288 | 307 | 20 | – | – | |
| Phobius | 308 | 312 | 5 | – | – | |
| TMHMM | 313 | 332 | 20 | – | – | |
| Phobius | 313 | 331 | 19 | – | – | |
| Phobius | 332 | 380 | 49 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0336190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0336190.1, powered by CORGI.
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