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Lj4g3v0336710.1

Overview

Field Value
Gene ID Lj4g3v0336710
Transcript ID Lj4g3v0336710.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Glycine max] gi|356512097|ref|XP_003524757.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13370
1 468 468 1.20E-190 –
PANTHER
PTHR13370:SF3
1 468 468 1.20E-190 –
PIRSF
PIRSF017259
1 475 475 1.10E-136 –
ProSiteProfiles
PS51627
8 484 477 134.015
IPR016691
Pfam
PF01170
199 324 126 1.10E-10
IPR000241
Gene3D
G3DSA:3.40.50.150
201 313 113 3.00E-15
IPR029063
SUPERFAMILY
SSF53335
211 430 220 7.39E-22
IPR029063
ProSitePatterns
PS00092
305 311 7 –
IPR002052
Gene3D
G3DSA:3.40.50.150
356 377 22 3.00E-15
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj4g3v0336710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0336710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.