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Lj4g3v0336860.2

Overview

Field Value
Gene ID Lj4g3v0336860
Transcript ID Lj4g3v0336860.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tRNA (guanine(37)-N1)-methyltransferase 2-like [Cicer arietinum] gi|502151698|ref|XP_004508569.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF02475
1 256 256 7.20E-46
IPR030382
ProSiteProfiles
PS51684
1 306 306 86.969
IPR030382
PANTHER
PTHR23245
1 104 104 1.40E-108 –
PANTHER
PTHR23245:SF36
1 104 104 1.40E-108 –
Gene3D
G3DSA:3.40.50.150
2 100 99 1.70E-62
IPR029063
SUPERFAMILY
SSF53335
2 100 99 2.04E-47
IPR029063
CDD
cd02440
42 107 66 4.17E-05 –
MobiDBLite
mobidb-lite
179 209 31 – –
Gene3D
G3DSA:3.40.50.150
214 305 92 1.70E-62
IPR029063
SUPERFAMILY
SSF53335
215 305 91 2.04E-47
IPR029063
PANTHER
PTHR23245:SF36
216 309 94 1.40E-108 –
PANTHER
PTHR23245
216 309 94 1.40E-108 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj4g3v0336860.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0336860.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.