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Lj4g3v0365690.1

Overview

Field Value
Gene ID Lj4g3v0365690
Transcript ID Lj4g3v0365690.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Root phototropism protein [Medicago truncatula] gi|357476259|ref|XP_003608415.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32370
14 276 263 0 –
PANTHER
PTHR32370:SF6
14 276 263 0
IPR029959
SUPERFAMILY
SSF54695
37 131 95 2.35E-14
IPR011333
Gene3D
G3DSA:3.30.710.10
42 131 90 2.10E-10 –
Pfam
PF00651
46 131 86 2.70E-04
IPR000210
ProSiteProfiles
PS50097
46 114 69 10.117
IPR000210
Pfam
PF03000
230 525 296 4.30E-99
IPR027356
ProSiteProfiles
PS51649
230 549 320 86.039
IPR027356
PANTHER
PTHR32370
303 589 287 0 –
PANTHER
PTHR32370:SF6
303 589 287 0
IPR029959
MobiDBLite
mobidb-lite
563 589 27 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj4g3v0365690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0365690.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.