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Lj4g3v0409460.1

Overview

Field Value
Gene ID Lj4g3v0409460
Transcript ID Lj4g3v0409460.1
Lotus japonicus genome version MG20 v3.0
Description Phosphoglycerate mutase-like protein [Medicago truncatula] gi|357476115|ref|XP_003608343.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23029:SF40
4 107 104 1.30E-177 –
PANTHER
PTHR23029
4 107 104 1.30E-177 –
SUPERFAMILY
SSF53254
18 248 231 7.86E-32
IPR029033
Gene3D
G3DSA:3.40.50.1240
18 248 231 1.70E-23
IPR029033
SMART
SM00855
19 215 197 3.30E-08
IPR013078
CDD
cd07067
19 90 72 1.17E-13
IPR013078
Pfam
PF00300
20 93 74 1.40E-06
IPR013078
PANTHER
PTHR23029
124 279 156 1.30E-177 –
PANTHER
PTHR23029:SF40
124 279 156 1.30E-177 –
Pfam
PF00300
172 244 73 1.30E-04
IPR013078
MobiDBLite
mobidb-lite
255 280 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 40

Expression data

Expression pattern

Expression pattern of Lj4g3v0409460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0409460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.