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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013078
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 64 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.467s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0032249.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356548228|ref|XP_003542505.1| chr0 10156639 10158458 +
3 domain predictions
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Lj0g3v0065899.1
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-like [Cicer arietinum] gi|502129390|ref|XP_004500284.1| chr0 23042529 23050320 -
4 domain predictions
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Lj0g3v0065899.3
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like [Glycine max] gi|356569515|ref|XP_003552945.1| chr0 23042529 23050320 -
4 domain predictions
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Lj0g3v0075979.1
n.a. Phosphoglycerate mutase-like protein [Medicago truncatula] gi|357490185|ref|XP_003615380.1| chr0 28910708 28916385 +
4 domain predictions
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Lj0g3v0075979.2
n.a. Phosphoglycerate mutase-like protein [Medicago truncatula] gi|357490185|ref|XP_003615380.1| chr0 28912438 28916385 +
4 domain predictions
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Lj0g3v0105939.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356508122|ref|XP_003522809.1| chr0 45586179 45589537 +
4 domain predictions
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Lj0g3v0126159.1
n.a. Phosphoglycerate mutase family protein isoform 1 [Theobroma cacao] gi|508773433|gb|EOY20689.1| chr0 56726479 56730809 -
2 domain predictions
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Lj0g3v0126159.2
n.a. Phosphoglycerate mutase family protein isoform 1 [Theobroma cacao] gi|508773433|gb|EOY20689.1| chr0 56726479 56731261 -
3 domain predictions
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Lj0g3v0126159.3
n.a. Phosphoglycerate mutase family protein isoform 1 [Theobroma cacao] gi|508773433|gb|EOY20689.1| chr0 56726479 56730815 -
3 domain predictions
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Lj0g3v0126159.4
n.a. Phosphoglycerate mutase family protein isoform 1 [Theobroma cacao] gi|508773433|gb|EOY20689.1| chr0 56726479 56731261 -
3 domain predictions
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Lj0g3v0212439.1
n.a. PREDICTED: probable phosphoglycerate mutase GpmB-like [Cicer arietinum] gi|502152940|ref|XP_004509162.1| chr0 107209422 107213684 -
4 domain predictions
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Lj0g3v0212449.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Medicago truncatula] gi|357518595|ref|XP_003629586.1| chr0 107214809 107216990 -
4 domain predictions
 –
Lj0g3v0212449.2
n.a. PREDICTED: probable phosphoglycerate mutase gpmB-like [Glycine max] gi|356514015|ref|XP_003525703.1| chr0 107214809 107216990 -
4 domain predictions
 –
Lj0g3v0300319.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508711030|gb|EOY02927.1| chr0 156030178 156035880 +
4 domain predictions
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Lj0g3v0332599.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508704505|gb|EOX96401.1| chr0 174048159 174051113 -
2 domain predictions
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Lj1g3v0638730.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356508122|ref|XP_003522809.1| chr1 8269510 8272972 -
4 domain predictions
 –
Lj1g3v2100390.1
n.a. phosphoglycerate mutase-like protein [Glycine max] gi|351721195|ref|NP_001237969.1| chr1 25280456 25286886 +
4 domain predictions
 –
Lj1g3v3870630.1
n.a. 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Medicago truncatula] gi|357490933|ref|XP_003615754.1| chr1 44402285 44404356 +
3 domain predictions
 –
Lj1g3v4955100.1
n.a. PREDICTED: broad-range acid phosphatase DET1-like [Cicer arietinum] gi|502117247|ref|XP_004495754.1| chr1 60181016 60183037 -
4 domain predictions
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Lj2g3v2028930.1
n.a. 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Medicago truncatula] gi|357481571|ref|XP_003611071.1| chr2 31029930 31032307 -
4 domain predictions
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Lj2g3v2149650.1
n.a. Phosphoglycerate mutase-like protein [Medicago truncatula] gi|357490187|ref|XP_003615381.1| chr2 32465747 32469041 -
4 domain predictions
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Lj2g3v2293740.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508705568|gb|EOX97464.1| chr2 33413437 33415334 -
2 domain predictions
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Lj2g3v2304810.1
n.a. PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3-like [Glycine max] gi|356553092|ref|XP_003544892.1| chr2 33463018 33475624 +
4 domain predictions
 –
Lj2g3v3372960.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508705568|gb|EOX97464.1| chr2 42985465 42987362 +
2 domain predictions
 –
Lj3g3v1132610.1
n.a. 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Phaseolus vulgaris] gi|353227769|emb|CCE25834.1| chr3 15346420 15350905 +
4 domain predictions
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Lj3g3v3006180.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Medicago truncatula] gi|357471937|ref|XP_003606253.1| chr3 37583399 37588153 -
4 domain predictions
 –
Lj4g3v0409460.1
n.a. Phosphoglycerate mutase-like protein [Medicago truncatula] gi|357476115|ref|XP_003608343.1| chr4 5205998 5211590 -
4 domain predictions
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Lj4g3v2820090.1
n.a. PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Glycine max] gi|356511107|ref|XP_003524271.1| chr4 37645189 37648993 +
4 domain predictions
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Lj4g3v2820100.1
n.a. n.a. chr4 37646536 37649229 -
2 domain predictions
 –
Lj5g3v1452180.1
n.a. PREDICTED: broad-range acid phosphatase DET1-like [Cicer arietinum] gi|502117247|ref|XP_004495754.1| chr5 21432009 21433231 +
4 domain predictions
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Lj6g3v0673260.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508704505|gb|EOX96401.1| chr6 6709406 6714015 +
2 domain predictions
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Lj6g3v1694950.1
n.a. Phosphoglycerate mutase family protein [Theobroma cacao] gi|508781808|gb|EOY29064.1| chr6 19158181 19161531 +
4 domain predictions
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Lj6g3v2041900.1
n.a. PREDICTED: probable phosphoglycerate mutase gpmB-like [Glycine max] gi|356549333|ref|XP_003543048.1| chr6 24020061 24022899 -
4 domain predictions
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LotjaGi1g1v0001600.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT4G38370.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|P50201|MAS12_AGRRH Agropine synthesis reductase; TrEMBL-Plants: tr|A0A0B2SRK5|A0A0B2SRK5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0001600 LjG1.1_chr1 547809 551226 -
4 domain predictions
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LotjaGi1g1v0001600.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT4G38370.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|P50201|MAS12_AGRRH Agropine synthesis reductase; TrEMBL-Plants: tr|A0A0B2SRK5|A0A0B2SRK5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0001600 LjG1.1_chr1 547814 551324 -
4 domain predictions
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LotjaGi1g1v0117500.1
n.a. 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase; TAIR: AT1G07110.1 fructose-2,6-bisphosphatase; Swiss-Prot: sp|Q9MB58|F26_ARATH 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase; TrEMBL-Plants: tr|K7M821|K7M821_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0117500 LjG1.1_chr1 18468331 18480800 -
4 domain predictions
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LotjaGi1g1v0133500.1
n.a. Phosphoglycerate mutase family protein; TAIR: AT1G58280.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|G7K608|G7K608_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0133500 LjG1.1_chr1 21482808 21489029 +
4 domain predictions
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LotjaGi1g1v0147800.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147800 LjG1.1_chr1 25239269 25244258 -
4 domain predictions
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LotjaGi1g1v0147800.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147800 LjG1.1_chr1 25239269 25244258 -
4 domain predictions
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LotjaGi1g1v0245800.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|A0A072UYQ0|A0A072UYQ0_MEDTR Phosphoglycerate/bisphosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0245800 LjG1.1_chr1 58960817 58965184 -
4 domain predictions
 –
LotjaGi1g1v0245800.2
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT1G22170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q6MEW4|GPMA_PARUW 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JVH1|I1JVH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0245800 LjG1.1_chr1 58962029 58964377 -
4 domain predictions
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LotjaGi1g1v0414700.1
n.a. Phosphoglycerate mutase family protein; TAIR: AT5G64460.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|I3S803|I3S803_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0414700 LjG1.1_chr1 90726788 90734133 +
4 domain predictions
 –
LotjaGi1g1v0414700.2
n.a. Phosphoglycerate mutase-like protein; TAIR: AT5G64460.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|I3S803|I3S803_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0414700 LjG1.1_chr1 90726940 90733737 +
4 domain predictions
 –
LotjaGi1g1v0414700.3
n.a. Phosphoglycerate mutase-like protein; TAIR: AT5G64460.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|I3S803|I3S803_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0414700 LjG1.1_chr1 90726940 90733737 +
4 domain predictions
 –
LotjaGi1g1v0598600.1
n.a. Phosphoglycerate mutase family protein; TAIR: AT3G60450.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|P57075|UBS3A_HUMAN Ubiquitin-associated and SH3 domain-containing protein A; TrEMBL-Plants: tr|G7LBM5|G7LBM5_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0598600 LjG1.1_chr1 113935666 113941220 -
2 domain predictions
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LotjaGi2g1v0104000.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G26780.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|B0UBD4|GPMA_METS4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TrEMBL-Plants: tr|I1JCZ4|I1JCZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0104000 LjG1.1_chr2 34878952 34885716 -
4 domain predictions
 –
LotjaGi2g1v0435400.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT3G05170.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9MAA2|AT74_ARATH Phosphoglycerate mutase-like protein AT74; TrEMBL-Plants: tr|I3STP2|I3STP2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0435400 LjG1.1_chr2 93190402 93194811 -
4 domain predictions
 –
LotjaGi3g1v0064200.1
n.a. Phosphoglycerate mutase family protein; TAIR: AT3G60450.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q5UQ52|YR708_MIMIV Uncharacterized phosphoglycerate mutase family protein R708; TrEMBL-Plants: tr|G7LBM5|G7LBM5_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi3g1v0064200 LjG1.1_chr3 6805136 6809031 +
2 domain predictions
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LotjaGi3g1v0480200.1
n.a. 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TAIR: AT5G22620.1 phosphoglycerate/bisphosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FNJ9|CA1P_ARATH Probable 2-carboxy-D-arabinitol-1-phosphatase; TrEMBL-Plants: tr|G7JKZ0|G7JKZ0_MEDTR 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase; Found in the gene: LotjaGi3g1v0480200 LjG1.1_chr3 89771786 89777123 -
4 domain predictions
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LotjaGi4g1v0042200.1
n.a. Phosphoglycerate mutase family protein; TAIR: AT5G64460.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|Q9FGF0|PGML1_ARATH Phosphoglycerate mutase-like protein 1; TrEMBL-Plants: tr|I3SKZ4|I3SKZ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0042200 LjG1.1_chr4 4978170 4984653 -
4 domain predictions
 –