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Lj4g3v0586770.1

Overview

Field Value
Gene ID Lj4g3v0586770
Transcript ID Lj4g3v0586770.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor AP2-EREBP [Lotus japonicus] gi|193237569|dbj|BAG50061.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 30 30 – –
PANTHER
PTHR31677:SF11
43 168 126 1.50E-56 –
PANTHER
PTHR31677
43 168 126 1.50E-56 –
MobiDBLite
mobidb-lite
74 104 31 – –
ProSiteProfiles
PS51032
100 157 58 24.935
IPR001471
Pfam
PF00847
100 149 50 3.40E-13
IPR001471
SUPERFAMILY
SSF54171
100 158 59 1.50E-22
IPR016177
SMART
SM00380
100 163 64 7.50E-38
IPR001471
Gene3D
G3DSA:3.30.730.10
100 158 59 1.30E-32
IPR001471
PRINTS
PR00367
101 112 12 3.40E-11
IPR001471
CDD
cd00018
101 157 57 1.61E-32
IPR001471
PRINTS
PR00367
123 139 17 3.40E-11
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v0586770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0586770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.