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Lj4g3v0669600.1

Overview

Field Value
Gene ID Lj4g3v0669600
Transcript ID Lj4g3v0669600.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor Pur-alpha 1 isoform 1 [Glycine max] gi|356521624|ref|XP_003529454.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12611
1 147 147 3.60E-125
IPR006628
SMART
SM00712
21 82 62 3.90E-23
IPR006628
Pfam
PF04845
25 79 55 3.90E-09
IPR006628
SMART
SM00712
84 151 68 6.50E-25
IPR006628
Pfam
PF04845
85 146 62 8.80E-10
IPR006628
PANTHER
PTHR12611
173 186 14 3.60E-125
IPR006628
PANTHER
PTHR12611
202 260 59 3.60E-125
IPR006628
Pfam
PF04845
204 259 56 1.20E-11
IPR006628
SMART
SM00712
210 260 51 2.00E-16
IPR006628

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0032422
Molecular function Purine-rich negative regulatory element binding Interacting selectively and non-covalently with a 30-bp purine-rich negative regulatory element; the best characterized such element is found in the first intronic region of the rat cardiac alpha-myosin heavy chain gene, and contains two palindromic high-affinity Ets-binding sites (CTTCCCTGGAAG). The presence of this element restricts expression of the gene containing it to cardiac myocytes.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v0669600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0669600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.