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Lj4g3v1130590.1

Overview

Field Value
Gene ID Lj4g3v1130590
Transcript ID Lj4g3v1130590.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: adenylosuccinate synthetase 2, chloroplastic-like [Glycine max] gi|356572048|ref|XP_003554182.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_00011
1 517 517 124.995
IPR001114
PANTHER
PTHR11846
17 342 326 1.20E-232
IPR001114
PANTHER
PTHR11846:SF4
17 342 326 1.20E-232 –
Gene3D
G3DSA:3.40.440.10
58 150 93 8.60E-50 –
SUPERFAMILY
SSF52540
59 349 291 7.54E-75
IPR027417
SMART
SM00788
59 516 458 1.80E-139
IPR001114
CDD
cd03108
59 509 451 4.78E-157
IPR001114
Pfam
PF00709
62 344 283 1.30E-79
IPR001114
Gene3D
G3DSA:1.10.300.10
158 257 100 1.00E-14 –
Gene3D
G3DSA:3.40.440.10
258 327 70 8.60E-50 –
Pfam
PF00709
356 515 160 1.60E-48
IPR001114
SUPERFAMILY
SSF52540
356 516 161 2.02E-43
IPR027417
Gene3D
G3DSA:3.90.170.10
358 516 159 1.40E-51 –
PANTHER
PTHR11846
372 517 146 1.20E-232
IPR001114
PANTHER
PTHR11846:SF4
372 517 146 1.20E-232 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004019
Molecular function Adenylosuccinate synthase activity Catalysis of the reaction: L-aspartate + GTP + IMP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + 3 H(+) + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006164
Biological process Purine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v1130590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1130590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.