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Lj4g3v1202210.1

Overview

Field Value
Gene ID Lj4g3v1202210
Transcript ID Lj4g3v1202210.1
Lotus japonicus genome version MG20 v3.0
Description calcineurin B-like protein [Ammopiptanthus mongolicus] gi|58532581|gb|AAW78849.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23056
1 210 210 3.20E-154 –
PANTHER
PTHR23056:SF41
1 210 210 3.20E-154 –
SUPERFAMILY
SSF47473
22 202 181 2.22E-41
IPR011992
Gene3D
G3DSA:1.10.238.10
22 203 182 1.80E-45
IPR011992
ProSiteProfiles
PS50222
67 102 36 10.943
IPR002048
SMART
SM00054
71 99 29 26
IPR002048
PRINTS
PR00450
75 96 22 1.30E-07 –
ProSiteProfiles
PS50222
104 139 36 12.393
IPR002048
Pfam
PF13499
107 177 71 2.70E-09
IPR002048
CDD
cd00051
108 178 71 7.36E-11
IPR002048
SMART
SM00054
108 136 29 0.17
IPR002048
ProSitePatterns
PS00018
117 129 13 –
IPR018247
PRINTS
PR00450
122 140 19 1.30E-07 –
ProSiteProfiles
PS50222
148 183 36 11.863
IPR002048
SMART
SM00054
152 180 29 0.0046
IPR002048
ProSitePatterns
PS00018
161 173 13 –
IPR018247
PRINTS
PR00450
168 188 21 1.30E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj4g3v1202210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1202210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.