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Lj4g3v1289550.1

Overview

Field Value
Gene ID Lj4g3v1289550
Transcript ID Lj4g3v1289550.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: Protein-PII uridylyltransferase [Glycine max] gi|356540171|ref|XP_003538563.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31096
1 442 442 0 –
PANTHER
PTHR31096:SF6
1 442 442 0 –
SUPERFAMILY
SSF55021
30 101 72 3.82E-09 –
CDD
cd04895
33 100 68 1.78E-38 –
ProSiteProfiles
PS51671
34 111 78 8.298
IPR002912
Gene3D
G3DSA:3.30.70.260
43 100 58 5.50E-04 –
SUPERFAMILY
SSF55021
111 186 76 2.37E-13 –
Gene3D
G3DSA:3.30.70.260
113 185 73 5.50E-16 –
CDD
cd04925
114 188 75 4.93E-35 –
ProSiteProfiles
PS51671
115 200 86 11.159
IPR002912
Pfam
PF01842
116 164 49 1.20E-08
IPR002912
CDD
cd04897
245 319 75 2.01E-40 –
SUPERFAMILY
SSF55021
321 389 69 4.30E-13 –
Gene3D
G3DSA:3.30.70.260
321 386 66 3.50E-14 –
CDD
cd04926
323 394 72 1.65E-36 –
ProSiteProfiles
PS51671
325 412 88 13.813
IPR002912
Pfam
PF01842
329 387 59 1.60E-10
IPR002912

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj4g3v1289550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1289550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.