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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1329880 |
| Transcript ID | Lj4g3v1329880.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine max] gi|356550360|ref|XP_003543555.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | – | – | |
| PANTHER | 19 | 132 | 114 | 1.20E-151 | ||
| PANTHER | 19 | 132 | 114 | 1.20E-151 | – | |
| Gene3D | 30 | 86 | 57 | 3.10E-31 | ||
| Pfam | 53 | 225 | 173 | 8.70E-08 | ||
| Coils | 108 | 133 | 26 | – | – | |
| CDD | 142 | 200 | 59 | 5.39E-04 | – | |
| Gene3D | 153 | 294 | 142 | 3.10E-31 | ||
| SUPERFAMILY | 154 | 295 | 142 | 9.30E-20 | ||
| PANTHER | 158 | 367 | 210 | 1.20E-151 | ||
| PANTHER | 158 | 367 | 210 | 1.20E-151 | – | |
| Gene3D | 324 | 367 | 44 | 2.20E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj4g3v1329880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1329880.1, powered by CORGI.
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