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GO:0006259

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description DNA metabolic process
Full defintion Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
Subterm of

Relationships

The relationship of GO:0006259 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0198506732

, · pages

Associated Lotus transcripts 50

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0116299.1
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
GO terms
5
Lj0g3v0292879.1
– PREDICTED: meiotic recombination protein SPO11-1-like [Cicer arietinum] gi|502100203|ref|XP_004491659.1|
GO terms
5
Lj0g3v0292879.2
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
GO terms
5
Lj1g3v0112930.1
– Meiotic recombination protein DMC1 homolog [Glycine max] gi|351726994|ref|NP_001238425.1|
GO terms
4
Lj1g3v4226710.1
– PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1|
GO terms
4
Lj1g3v4226710.2
– PREDICTED: DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Cicer arietinum] gi|502108338|ref|XP_004493447.1|
GO terms
4
Lj2g3v0146560.1
– PREDICTED: DNA gyrase subunit A, chloroplastic/mitochondrial-like isoform X1 [Cicer arietinum] gi|502127538|ref|XP_004499748.1|
GO terms
5
Lj2g3v2051220.1
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
GO terms
5
Lj2g3v2051220.2
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
GO terms
5
Lj3g3v0422710.2
– PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Solanum lycopersicum] gi|460396872|ref|XP_004243994.1|
GO terms
4
Lj3g3v0826110.1
– PREDICTED: DNA topoisomerase 2-like [Glycine max] gi|356555329|ref|XP_003545986.1|
GO terms
5
Lj4g3v0877830.1
– PREDICTED: DNA topoisomerase 2-like [Cicer arietinum] gi|502128025|ref|XP_004499912.1|
GO terms
5
Lj4g3v2172560.1
– PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X4 [Cicer arietinum] gi|502150423|ref|XP_004507946.1|
GO terms
4
Lj4g3v2215340.1
– PREDICTED: DNA repair protein RAD51 homolog 1-like [Cicer arietinum] gi|502150634|ref|XP_004508049.1|
GO terms
4
Lj5g3v0615710.1
– PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi|502121820|ref|XP_004497452.1|
GO terms
5
Lj5g3v2045260.1
– PREDICTED: meiotic recombination protein DMC1 homolog [Cicer arietinum] gi|502119553|ref|XP_004496658.1|
GO terms
4
Lj6g3v1239560.1
– RecA [Medicago truncatula] gi|357449857|ref|XP_003595205.1|
GO terms
4
LotjaGi1g1v0669500.1
– RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500
GO terms
4
LotjaGi1g1v0669500.2
– RecA; TAIR: AT3G10140.1 RECA homolog 3; Swiss-Prot: sp|Q8RY99|RECAM_ARATH DNA repair protein recA homolog 2, mitochondrial; TrEMBL-Plants: tr|G7KSL4|G7KSL4_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi1g1v0669500
GO terms
4
LotjaGi2g1v0064900.1
– DNA gyrase subunit A; TAIR: AT3G10690.1 DNA GYRASE A; Swiss-Prot: sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7I9Z9|G7I9Z9_MEDTR DNA gyrase subunit A; Found in the gene: LotjaGi2g1v0064900
GO terms
5
LotjaGi2g1v0064900.2
– DNA gyrase subunit A; TAIR: AT3G10690.1 DNA GYRASE A; Swiss-Prot: sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1L2U5|I1L2U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0064900
GO terms
5
LotjaGi2g1v0064900.3
– DNA gyrase subunit A; TAIR: AT3G10690.1 DNA GYRASE A; Swiss-Prot: sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7I9Z9|G7I9Z9_MEDTR DNA gyrase subunit A; Found in the gene: LotjaGi2g1v0064900
GO terms
5
LotjaGi2g1v0064900.4
– DNA gyrase subunit A; TAIR: AT3G10690.1 DNA GYRASE A; Swiss-Prot: sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7I9Z9|G7I9Z9_MEDTR DNA gyrase subunit A; Found in the gene: LotjaGi2g1v0064900
GO terms
5
LotjaGi2g1v0088900_LC.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
GO terms
5
LotjaGi2g1v0088900_LC.4
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
GO terms
5
LotjaGi2g1v0436400.1
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
5
LotjaGi2g1v0436400.2
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|G7KC02|G7KC02_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi2g1v0436400
GO terms
5
LotjaGi2g1v0436400.3
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.2 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
5
LotjaGi2g1v0436400.4
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
5
LotjaGi2g1v0436400.6
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
5
LotjaGi3g1v0037500.1
– Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|V7AKD7|V7AKD7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500
GO terms
4
LotjaGi3g1v0037500.2
– Protein recA; TAIR: AT1G79050.1 recA DNA recombination family protein; Swiss-Prot: sp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0R0G3Y7|A0A0R0G3Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0037500
GO terms
4
LotjaGi3g1v0121000.1
– DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000
GO terms
5
LotjaGi3g1v0121000.2
– DNA topoisomerase 2; TAIR: AT3G23890.2 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|I1MJQ7|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000
GO terms
5
LotjaGi4g1v0112400_LC.1
– DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|A0A151TWJ6|A0A151TWJ6_CAJCA DNA topoisomerase 2; Found in the gene: LotjaGi4g1v0112400_LC
GO terms
5
LotjaGi4g1v0112400_LC.2
– DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|A0A151TWJ6|A0A151TWJ6_CAJCA DNA topoisomerase 2; Found in the gene: LotjaGi4g1v0112400_LC
GO terms
5
LotjaGi4g1v0112400_LC.3
– DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|A0A151TWJ6|A0A151TWJ6_CAJCA DNA topoisomerase 2; Found in the gene: LotjaGi4g1v0112400_LC
GO terms
5
LotjaGi4g1v0112600.1
– DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp|O24308|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr|A0A151TWJ6|A0A151TWJ6_CAJCA DNA topoisomerase 2; Found in the gene: LotjaGi4g1v0112600
GO terms
5
LotjaGi4g1v0310500.1
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500
GO terms
4
LotjaGi4g1v0310500.2
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A151SS31|A0A151SS31_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0310500
GO terms
4
LotjaGi4g1v0310500.3
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|A0A072V2Z1|A0A072V2Z1_MEDTR DNA repair protein RecA, putative; Found in the gene: LotjaGi4g1v0310500
GO terms
4
LotjaGi4g1v0319500.1
– DNA repair protein RAD51 like 1; TAIR: AT5G20850.1 RAS associated with diabetes protein 51; Swiss-Prot: sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1; TrEMBL-Plants: tr|A0A151SSM0|A0A151SSM0_CAJCA DNA repair protein RAD51 isogeny 1; Found in the gene: LotjaGi4g1v0319500
GO terms
4
LotjaGi5g1v0072800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A068F783|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800
GO terms
5
LotjaGi5g1v0309600.1
– Disrupted meiotic cDNA 1 protein; TAIR: AT3G22880.1 DNA repair (Rad51) family protein; Swiss-Prot: sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog; TrEMBL-Plants: tr|A0A0R0HYK0|A0A0R0HYK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0309600
GO terms
4
LotjaGi5g1v0309600.2
– Disrupted meiotic cDNA 1 protein; TAIR: AT3G22880.2 DNA repair (Rad51) family protein; Swiss-Prot: sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog; TrEMBL-Plants: tr|K7LL69|K7LL69_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0309600
GO terms
4
LotjaGi5g1v0309600.3
– Disrupted meiotic cDNA 1 protein; TAIR: AT3G22880.2 DNA repair (Rad51) family protein; Swiss-Prot: sp|Q96449|DMC1_SOYBN Meiotic recombination protein DMC1 homolog; TrEMBL-Plants: tr|A0A151U6N0|A0A151U6N0_CAJCA Meiotic recombination protein DMC1 isogeny; Found in the gene: LotjaGi5g1v0309600
GO terms
4
LotjaGi6g1v0230700.1
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
GO terms
4
LotjaGi6g1v0230700.2
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
GO terms
4
LotjaGi6g1v0230700.3
– RecA family protein; TAIR: AT2G19490.1 recA DNA recombination family protein; Swiss-Prot: sp|Q9ZUP2|RECA3_ARATH DNA repair protein recA homolog 3, mitochondrial; TrEMBL-Plants: tr|G7IIL3|G7IIL3_MEDTR DNA repair and recombination protein; Found in the gene: LotjaGi6g1v0230700
GO terms
4
LotjaGi6g1v0346800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|I1H6P7|I1H6P7_BRADI DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi6g1v0346800
GO terms
5

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006259
Biological process DNA metabolic process 1 2.00