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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1535180 |
| Transcript ID | Lj4g3v1535180.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357477327|ref|XP_003608949.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 1.70E-195 | ||
| PANTHER | 1 | 333 | 333 | 1.70E-195 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 12 | 29 | 18 | – | – | |
| Pfam | 25 | 123 | 99 | 5.90E-08 | ||
| Phobius | 30 | 40 | 11 | – | – | |
| TMHMM | 41 | 63 | 23 | – | – | |
| Phobius | 41 | 62 | 22 | – | – | |
| Phobius | 63 | 73 | 11 | – | – | |
| Phobius | 74 | 99 | 26 | – | – | |
| TMHMM | 78 | 100 | 23 | – | – | |
| Phobius | 100 | 110 | 11 | – | – | |
| Phobius | 111 | 136 | 26 | – | – | |
| TMHMM | 113 | 135 | 23 | – | – | |
| Phobius | 137 | 163 | 27 | – | – | |
| TMHMM | 164 | 183 | 20 | – | – | |
| Phobius | 164 | 184 | 21 | – | – | |
| Pfam | 166 | 304 | 139 | 2.00E-09 | ||
| Phobius | 185 | 195 | 11 | – | – | |
| TMHMM | 196 | 218 | 23 | – | – | |
| Phobius | 196 | 218 | 23 | – | – | |
| Phobius | 219 | 229 | 11 | – | – | |
| SUPERFAMILY | 222 | 309 | 88 | 2.62E-09 | – | |
| TMHMM | 223 | 245 | 23 | – | – | |
| Phobius | 230 | 253 | 24 | – | – | |
| Phobius | 254 | 259 | 6 | – | – | |
| TMHMM | 258 | 280 | 23 | – | – | |
| Phobius | 260 | 281 | 22 | – | – | |
| Phobius | 282 | 286 | 5 | – | – | |
| TMHMM | 284 | 306 | 23 | – | – | |
| Phobius | 287 | 306 | 20 | – | – | |
| Phobius | 307 | 334 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj4g3v1535180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1535180.1, powered by CORGI.
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