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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1880720 |
| Transcript ID | Lj4g3v1880720.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Equilibrative nucleoside transporter [Medicago truncatula] gi|357478131|ref|XP_003609351.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| PIRSF | 2 | 397 | 396 | 7.00E-56 | ||
| PANTHER | 11 | 397 | 387 | 6.80E-260 | – | |
| PANTHER | 11 | 397 | 387 | 6.80E-260 | ||
| TMHMM | 19 | 41 | 23 | – | – | |
| Phobius | 20 | 46 | 27 | – | – | |
| Phobius | 47 | 57 | 11 | – | – | |
| TMHMM | 56 | 78 | 23 | – | – | |
| Phobius | 58 | 75 | 18 | – | – | |
| Phobius | 76 | 86 | 11 | – | – | |
| TMHMM | 85 | 107 | 23 | – | – | |
| Phobius | 87 | 108 | 22 | – | – | |
| Phobius | 109 | 119 | 11 | – | – | |
| PRINTS | 116 | 136 | 21 | 6.50E-07 | ||
| Phobius | 120 | 144 | 25 | – | – | |
| TMHMM | 122 | 144 | 23 | – | – | |
| Pfam | 126 | 226 | 101 | 4.70E-22 | ||
| Phobius | 145 | 155 | 11 | – | – | |
| TMHMM | 156 | 175 | 20 | – | – | |
| Phobius | 156 | 175 | 20 | – | – | |
| Phobius | 176 | 189 | 14 | – | – | |
| TMHMM | 188 | 210 | 23 | – | – | |
| Phobius | 190 | 210 | 21 | – | – | |
| Phobius | 211 | 245 | 35 | – | – | |
| Pfam | 235 | 396 | 162 | 8.00E-36 | ||
| Phobius | 246 | 266 | 21 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Phobius | 267 | 277 | 11 | – | – | |
| Phobius | 278 | 302 | 25 | – | – | |
| TMHMM | 278 | 300 | 23 | – | – | |
| Phobius | 303 | 308 | 6 | – | – | |
| Phobius | 309 | 333 | 25 | – | – | |
| Phobius | 334 | 338 | 5 | – | – | |
| PRINTS | 336 | 352 | 17 | 6.50E-07 | ||
| TMHMM | 337 | 359 | 23 | – | – | |
| Phobius | 339 | 360 | 22 | – | – | |
| PRINTS | 355 | 371 | 17 | 6.50E-07 | ||
| Phobius | 361 | 371 | 11 | – | – | |
| Phobius | 372 | 396 | 25 | – | – | |
| PRINTS | 373 | 397 | 25 | 6.50E-07 | ||
| TMHMM | 374 | 396 | 23 | – | – | |
| Phobius | 397 | 397 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of Lj4g3v1880720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1880720.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.