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Lj4g3v1881580.1

Overview

Field	Value
Gene ID	Lj4g3v1881580
Transcript ID	Lj4g3v1881580.1
Lotus japonicus genome version	MG20 v3.0
Description	CUE domain containing protein [Zea mays] gi\|226499346\|ref\|NP_001149805.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31245 View details on PTHR31245 Search for proteins/transripts with this domain View external data on PTHR31245	1	267	267	1.30E-138	–
PANTHER	PTHR31245:SF1 View details on PTHR31245:SF1 Search for proteins/transripts with this domain View external data on PTHR31245:SF1	1	267	267	1.30E-138	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	17	39	23	–	–
SUPERFAMILY	SSF46934 View details on SSF46934 Search for proteins/transripts with this domain View external data on SSF46934	35	83	49	2.14E-08	IPR009060 Show description in modal box View details on IPR009060 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51140 View details on PS51140 Search for proteins/transripts with this domain View external data on PS51140	39	82	44	13.759	IPR003892 Show description in modal box View details on IPR003892 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02845 View details on PF02845 Search for proteins/transripts with this domain View external data on PF02845	41	80	40	2.80E-05	IPR003892 Show description in modal box View details on IPR003892 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd14279 View details on cd14279 Search for proteins/transripts with this domain View external data on cd14279	43	77	35	8.40E-07	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	176	196	21	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	207	241	35	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj4g3v1881580.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1881580.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.