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Field | Value |
---|---|
Gene ID | Lj4g3v2120640 |
Transcript ID | Lj4g3v2120640.1 |
Lotus japonicus genome version | MG20 v3.0 |
Description | Villin-4 [Medicago truncatula] gi|357479579|ref|XP_003610075.1| |
Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 25 | 145 | 121 | – | – | |
PANTHER | 100 | 187 | 88 | 1.90E-35 | ||
PANTHER | 100 | 187 | 88 | 1.90E-35 | ||
SUPERFAMILY | 115 | 188 | 74 | 5.49E-24 | ||
Gene3D | 119 | 188 | 70 | 9.30E-23 | ||
ProSiteProfiles | 123 | 188 | 66 | 19.845 | ||
Pfam | 153 | 188 | 36 | 2.80E-17 | ||
SMART | 153 | 188 | 36 | 1.40E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
Biological process | Cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. | ||
Molecular function | Actin filament binding | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. | ||
Biological process | Actin filament bundle assembly | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. |
Expression pattern of Lj4g3v2120640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2120640.1, powered by CORGI.
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