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Lj4g3v2215250.1

Overview

Field Value
Gene ID Lj4g3v2215250
Transcript ID Lj4g3v2215250.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 3 subunit K-like [Glycine max] gi|356547978|ref|XP_003542381.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13022
1 191 191 5.00E-94
IPR009374
Hamap
MF_03010
5 190 186 18.88
IPR009374
SUPERFAMILY
SSF48371
10 131 122 1.90E-42
IPR016024
Gene3D
G3DSA:1.25.40.250
15 122 108 6.50E-41
IPR016020
Pfam
PF10075
64 189 126 8.90E-19
IPR033464
Gene3D
G3DSA:1.10.10.10
126 189 64 2.20E-19
IPR011991
SUPERFAMILY
SSF46785
134 189 56 4.90E-11
IPR011991

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0005852
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
Subterm of
GO:0006446
Biological process Regulation of translational initiation Any process that modulates the frequency, rate or extent of translational initiation.
Subterm of
Regulates
GO:0043022
Molecular function Ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v2215250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2215250.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.