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Lj4g3v2263920.1

Overview

Field Value
Gene ID Lj4g3v2263920
Transcript ID Lj4g3v2263920.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: flowering time control protein FCA-like [Cicer arietinum] gi|502150804|ref|XP_004508132.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 107 107 – –
PANTHER
PTHR24012:SF382
13 28 16 3.00E-124
IPR031096
PANTHER
PTHR24012
13 28 16 3.00E-124 –
SUPERFAMILY
SSF54928
71 187 117 4.84E-22
IPR012677
Gene3D
G3DSA:3.30.70.330
96 192 97 2.60E-20
IPR012677
PANTHER
PTHR24012:SF382
105 347 243 3.00E-124
IPR031096
PANTHER
PTHR24012
105 347 243 3.00E-124 –
ProSiteProfiles
PS50102
108 189 82 15.716
IPR000504
SMART
SM00360
109 185 77 1.10E-16
IPR000504
Pfam
PF00076
110 172 63 9.90E-16
IPR000504
SUPERFAMILY
SSF54928
199 300 102 6.99E-24
IPR012677
Gene3D
G3DSA:3.30.70.330
199 288 90 6.00E-23
IPR012677
ProSiteProfiles
PS50102
199 279 81 16.5
IPR000504
CDD
cd12637
200 279 80 1.30E-45 –
SMART
SM00360
200 275 76 2.40E-19
IPR000504
Pfam
PF00076
201 266 66 1.90E-16
IPR000504
MobiDBLite
mobidb-lite
279 472 194 – –
MobiDBLite
mobidb-lite
487 571 85 – –
SMART
SM00456
606 638 33 5.60E-10
IPR001202
CDD
cd00201
608 638 31 3.21E-09 –
Gene3D
G3DSA:2.20.70.10
609 639 31 5.40E-15 –
Pfam
PF00397
610 636 27 6.70E-10
IPR001202
SUPERFAMILY
SSF51045
610 639 30 3.41E-10
IPR001202
ProSitePatterns
PS01159
611 636 26 –
IPR001202
ProSiteProfiles
PS50020
611 638 28 12.038
IPR001202
PANTHER
PTHR24012
620 701 82 3.00E-124 –
PANTHER
PTHR24012:SF382
620 701 82 3.00E-124
IPR031096
MobiDBLite
mobidb-lite
635 659 25 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v2263920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2263920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.