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Lj4g3v2263920.2

Overview

Field Value
Gene ID Lj4g3v2263920
Transcript ID Lj4g3v2263920.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: flowering time control protein FCA-like [Cicer arietinum] gi|502150804|ref|XP_004508132.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 113 113 – –
PANTHER
PTHR24012:SF382
85 353 269 9.40E-126
IPR031096
PANTHER
PTHR24012
85 353 269 9.40E-126 –
SUPERFAMILY
SSF54928
89 199 111 7.93E-22
IPR012677
Gene3D
G3DSA:3.30.70.330
92 198 107 9.90E-21
IPR012677
ProSiteProfiles
PS50102
114 195 82 15.716
IPR000504
SMART
SM00360
115 191 77 1.10E-16
IPR000504
Pfam
PF00076
116 178 63 1.00E-15
IPR000504
SUPERFAMILY
SSF54928
205 306 102 6.85E-24
IPR012677
Gene3D
G3DSA:3.30.70.330
205 294 90 6.20E-23
IPR012677
ProSiteProfiles
PS50102
205 285 81 16.5
IPR000504
SMART
SM00360
206 281 76 2.40E-19
IPR000504
CDD
cd12637
206 285 80 1.19E-45 –
Pfam
PF00076
207 272 66 1.90E-16
IPR000504
MobiDBLite
mobidb-lite
285 478 194 – –
MobiDBLite
mobidb-lite
493 577 85 – –
SMART
SM00456
612 644 33 5.60E-10
IPR001202
CDD
cd00201
614 644 31 3.25E-09 –
Gene3D
G3DSA:2.20.70.10
615 645 31 5.40E-15 –
Pfam
PF00397
616 642 27 6.80E-10
IPR001202
SUPERFAMILY
SSF51045
616 645 30 3.41E-10
IPR001202
ProSitePatterns
PS01159
617 642 26 –
IPR001202
ProSiteProfiles
PS50020
617 644 28 12.038
IPR001202
PANTHER
PTHR24012
626 707 82 9.40E-126 –
PANTHER
PTHR24012:SF382
626 707 82 9.40E-126
IPR031096
MobiDBLite
mobidb-lite
641 665 25 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v2263920.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2263920.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.