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Lj4g3v2263940.1

Overview

Field Value
Gene ID Lj4g3v2263940
Transcript ID Lj4g3v2263940.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable WRKY transcription factor 48-like [Glycine max] gi|356519913|ref|XP_003528613.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 68 68 – –
PANTHER
PTHR31221:SF13
34 96 63 8.50E-89 –
PANTHER
PTHR31221
34 96 63 8.50E-89 –
MobiDBLite
mobidb-lite
97 213 117 – –
PANTHER
PTHR31221:SF13
134 371 238 8.50E-89 –
PANTHER
PTHR31221
134 371 238 8.50E-89 –
Coils
Coil
180 205 26 – –
Gene3D
G3DSA:2.20.25.80
204 279 76 3.10E-33
IPR003657
SUPERFAMILY
SSF118290
212 279 68 2.88E-28
IPR003657
ProSiteProfiles
PS50811
214 279 66 31.605
IPR003657
SMART
SM00774
219 278 60 9.30E-39
IPR003657
Pfam
PF03106
220 277 58 5.60E-26
IPR003657
PANTHER
PTHR31221:SF13
395 408 14 8.50E-89 –
PANTHER
PTHR31221
395 408 14 8.50E-89 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v2263940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2263940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.