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Lj4g3v2370450.1

Overview

Field Value
Gene ID Lj4g3v2370450
Transcript ID Lj4g3v2370450.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2-like [Cicer arietinum] gi|502151133|ref|XP_004508294.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12085
12 408 397 3.50E-212 –
Gene3D
G3DSA:1.10.238.10
122 214 93 3.60E-08
IPR011992
SUPERFAMILY
SSF47473
158 218 61 3.67E-07
IPR011992
ProSiteProfiles
PS50222
182 217 36 8.711
IPR002048
ProSitePatterns
PS00018
195 207 13 –
IPR018247
Coils
Coil
263 283 21 – –
SUPERFAMILY
SSF47473
277 400 124 2.04E-16
IPR011992
Gene3D
G3DSA:1.10.238.10
285 307 23 3.60E-08
IPR011992
SUPERFAMILY
SSF47473
289 320 32 3.67E-07
IPR011992
ProSiteProfiles
PS50222
290 325 36 10.971
IPR002048
Pfam
PF13499
293 395 103 1.80E-13
IPR002048
ProSitePatterns
PS00018
303 315 13 –
IPR018247
Gene3D
G3DSA:1.10.238.10
308 398 91 1.00E-09
IPR011992
ProSiteProfiles
PS50222
365 400 36 7.205
IPR002048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj4g3v2370450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2370450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.