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Lj4g3v2401010.1

Overview

Field Value
Gene ID Lj4g3v2401010
Transcript ID Lj4g3v2401010.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger protein MAGPIE-like isoform X1 [Cicer arietinum] gi|502141724|ref|XP_004504607.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593
1 208 208 5.50E-144 –
PANTHER
PTHR10593:SF43
1 208 208 5.50E-144 –
MobiDBLite
mobidb-lite
24 48 25 – –
SUPERFAMILY
SSF57667
59 82 24 2.36E-05 –
Gene3D
G3DSA:3.30.160.60
59 82 24 1.70E-05
IPR013087
SMART
SM00355
60 82 23 0.0052
IPR015880
ProSiteProfiles
PS50157
60 82 23 10.97
IPR007087
ProSitePatterns
PS00028
62 82 21 –
IPR007087
SMART
SM00355
102 132 31 210
IPR015880
Gene3D
G3DSA:3.30.160.60
129 159 31 2.60E-04
IPR013087
SUPERFAMILY
SSF57667
133 158 26 2.36E-05 –
SMART
SM00355
138 165 28 52
IPR015880
MobiDBLite
mobidb-lite
200 270 71 – –
Coils
Coil
319 374 56 – –
PANTHER
PTHR10593
324 382 59 5.50E-144 –
PANTHER
PTHR10593:SF43
324 382 59 5.50E-144 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj4g3v2401010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2401010.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.