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Lj4g3v2573890.1

Overview

Field Value
Gene ID Lj4g3v2573890
Transcript ID Lj4g3v2573890.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max] gi|356512404|ref|XP_003524909.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10980:SF18
3 236 234 4.80E-120 –
PANTHER
PTHR10980
3 236 234 4.80E-120
IPR000406
MobiDBLite
mobidb-lite
25 57 33 – –
Pfam
PF02115
45 234 190 6.80E-83
IPR000406
SUPERFAMILY
SSF81296
48 235 188 6.65E-67
IPR014756
Gene3D
G3DSA:2.70.50.30
59 235 177 1.40E-73
IPR024792
PRINTS
PR00492
94 109 16 1.30E-09
IPR000406
PRINTS
PR00492
155 171 17 1.30E-09
IPR000406
PRINTS
PR00492
172 187 16 1.30E-09
IPR000406
PRINTS
PR00492
214 231 18 1.30E-09
IPR000406

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005094
Molecular function Rho GDP-dissociation inhibitor activity Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v2573890.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2573890.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.