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Lj4g3v2604210.1

Overview

Field	Value
Gene ID	Lj4g3v2604210
Transcript ID	Lj4g3v2604210.1
Lotus japonicus genome version	MG20 v3.0
Description	B3 domain-containing protein [Medicago truncatula] gi\|357437999\|ref\|XP_003589275.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:2.40.330.10 View details on G3DSA:2.40.330.10 Search for proteins/transripts with this domain View external data on G3DSA:2.40.330.10	53	151	99	3.90E-12	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF101936 View details on SSF101936 Search for proteins/transripts with this domain View external data on SSF101936	53	154	102	4.51E-13	IPR015300 Show description in modal box View details on IPR015300 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd10017 View details on cd10017 Search for proteins/transripts with this domain View external data on cd10017	55	153	99	6.55E-10	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02362 View details on PF02362 Search for proteins/transripts with this domain View external data on PF02362	55	150	96	5.80E-08	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50863 View details on PS50863 Search for proteins/transripts with this domain View external data on PS50863	55	155	101	8.995	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01019 View details on SM01019 Search for proteins/transripts with this domain View external data on SM01019	55	155	101	0.0084	IPR003340 Show description in modal box View details on IPR003340 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v2604210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2604210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.