Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2604440.1

Overview

Field Value
Gene ID Lj4g3v2604440
Transcript ID Lj4g3v2604440.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22952:SF182
1 157 157 1.70E-64 –
PANTHER
PTHR22952
1 157 157 1.70E-64 –
MobiDBLite
mobidb-lite
1 58 58 – –
SMART
SM00338
28 92 65 3.10E-18
IPR004827
ProSiteProfiles
PS50217
30 76 47 10.703
IPR004827
Gene3D
G3DSA:1.20.5.170
30 76 47 1.50E-11 –
Pfam
PF00170
32 83 52 2.70E-11
IPR004827
SUPERFAMILY
SSF57959
32 85 54 3.31E-12 –
CDD
cd14702
33 83 51 3.58E-18 –
ProSitePatterns
PS00036
35 50 16 –
IPR004827
Coils
Coil
48 75 28 – –
Coils
Coil
83 110 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v2604440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2604440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.