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Lj4g3v2679640.1

Overview

Field	Value
Gene ID	Lj4g3v2679640
Transcript ID	Lj4g3v2679640.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Cicer arietinum] gi\|502140402\|ref\|XP_004504204.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	249	249	–	–
PANTHER	PTHR14009 View details on PTHR14009 Search for proteins/transripts with this domain View external data on PTHR14009	70	614	545	0	–
PANTHER	PTHR14009:SF12 View details on PTHR14009:SF12 Search for proteins/transripts with this domain View external data on PTHR14009:SF12	70	614	545	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	107	136	30	–	–
Pfam	PF07766 View details on PF07766 Search for proteins/transripts with this domain View external data on PF07766	200	464	265	3.80E-105	IPR011685 Show description in modal box View details on IPR011685 Search for proteins/transripts with this domain View on EBI InterPro Service
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	250	272	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	250	273	24	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	274	643	370	–	–
ProSiteProfiles	PS51758 View details on PS51758 Search for proteins/transripts with this domain View external data on PS51758	296	503	208	23.599	IPR033122 Show description in modal box View details on IPR033122 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	505	534	30	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	521	541	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0043022 View details of GO:0043022 AmiGO InterPro QuickGO	Molecular function	Ribosome binding	Interacting selectively and non-covalently with any part of a ribosome.	Subterm of View details of GO:0043021

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v2679640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2679640.1, powered by CORGI.

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