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Lj4g3v2825510.1

Overview

Field Value
Gene ID Lj4g3v2825510
Transcript ID Lj4g3v2825510.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methyltransferase PMT26-like [Glycine max] gi|356512852|ref|XP_003525129.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 19 19 – –
TMHMM
TMhelix
17 39 23 – –
Phobius
TRANSMEMBRANE
20 39 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
40 769 730 – –
MobiDBLite
mobidb-lite
54 303 250 – –
PANTHER
PTHR10108:SF926
302 541 240 1.20E-239 –
PANTHER
PTHR10108
302 541 240 1.20E-239 –
Pfam
PF03141
317 768 452 6.70E-198
IPR004159
SUPERFAMILY
SSF53335
342 561 220 2.46E-24
IPR029063
Gene3D
G3DSA:3.40.50.150
390 555 166 1.40E-19
IPR029063
SUPERFAMILY
SSF53335
638 767 130 4.31E-08
IPR029063
PANTHER
PTHR10108
698 769 72 1.20E-239 –
PANTHER
PTHR10108:SF926
698 769 72 1.20E-239 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj4g3v2825510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2825510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.