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Lj4g3v2882120.1

Overview

Field Value
Gene ID Lj4g3v2882120
Transcript ID Lj4g3v2882120.1
Lotus japonicus genome version MG20 v3.0
Description BHLH transcription factor [Medicago truncatula] gi|357520555|ref|XP_003630566.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12565
6 36 31 9.70E-104 –
PANTHER
PTHR12565:SF90
6 36 31 9.70E-104 –
MobiDBLite
mobidb-lite
42 154 113 – –
PANTHER
PTHR12565
57 321 265 9.70E-104 –
PANTHER
PTHR12565:SF90
57 321 265 9.70E-104 –
SUPERFAMILY
SSF47459
145 213 69 6.54E-17
IPR011598
CDD
cd00083
145 202 58 6.30E-11 –
Gene3D
G3DSA:4.10.280.10
147 212 66 3.60E-17
IPR011598
ProSiteProfiles
PS50888
147 197 51 15.58
IPR011598
Pfam
PF00010
151 198 48 2.00E-07
IPR011598
SMART
SM00353
153 203 51 3.50E-10
IPR011598

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v2882120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2882120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.