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Lj4g3v3002670.2

Overview

Field Value
Gene ID Lj4g3v3002670
Transcript ID Lj4g3v3002670.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: high mobility group B protein 13-like isoform 1 [Glycine max] gi|356523471|ref|XP_003530362.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF47095
1 29 29 4.19E-06
IPR009071
ProSiteProfiles
PS50118
1 36 36 8.616
IPR009071
PANTHER
PTHR13711
1 39 39 5.80E-88 –
PANTHER
PTHR13711:SF228
1 39 39 5.80E-88 –
Gene3D
G3DSA:1.10.30.10
1 28 28 1.20E-05
IPR009071
MobiDBLite
mobidb-lite
62 86 25 – –
SUPERFAMILY
SSF47095
71 157 87 1.44E-22
IPR009071
PANTHER
PTHR13711:SF228
72 193 122 5.80E-88 –
PANTHER
PTHR13711
72 193 122 5.80E-88 –
Gene3D
G3DSA:1.10.30.10
83 150 68 4.90E-21
IPR009071
SMART
SM00398
83 151 69 7.10E-20
IPR009071
CDD
cd01390
84 147 64 5.73E-10 –
ProSiteProfiles
PS50118
84 150 67 18.388
IPR009071
Pfam
PF00505
84 150 67 4.50E-17
IPR009071
Coils
Coil
132 182 51 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj4g3v3002670.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3002670.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.