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Lj4g3v3014180.1

Overview

Field Value
Gene ID Lj4g3v3014180
Transcript ID Lj4g3v3014180.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calcineurin B-like protein 8-like isoform X1 [Cicer arietinum] gi|502139000|ref|XP_004503608.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23056
3 207 205 2.80E-116 –
PANTHER
PTHR23056:SF45
3 207 205 2.80E-116 –
SUPERFAMILY
SSF47473
19 200 182 4.87E-42
IPR011992
Gene3D
G3DSA:1.10.238.10
21 202 182 1.00E-45
IPR011992
Pfam
PF13833
46 91 46 0.0037
IPR002048
ProSiteProfiles
PS50222
64 99 36 10.357
IPR002048
SMART
SM00054
68 96 29 13
IPR002048
CDD
cd00051
71 130 60 4.01E-07
IPR002048
PRINTS
PR00450
72 93 22 1.60E-08 –
ProSiteProfiles
PS50222
101 136 36 11.78
IPR002048
Pfam
PF13499
104 169 66 5.40E-11
IPR002048
SMART
SM00054
105 133 29 5.6
IPR002048
CDD
cd00051
105 170 66 3.80E-09
IPR002048
PRINTS
PR00450
119 137 19 1.60E-08 –
ProSiteProfiles
PS50222
145 180 36 12.114
IPR002048
SMART
SM00054
149 177 29 0.81
IPR002048
PRINTS
PR00450
165 185 21 1.60E-08 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v3014180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3014180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.