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Lj4g3v3014540.2

Overview

Field Value
Gene ID Lj4g3v3014540
Transcript ID Lj4g3v3014540.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WD repeat-containing protein 44-like [Glycine max] gi|356527704|ref|XP_003532448.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14221
8 370 363 5.90E-190 –
PANTHER
PTHR14221:SF5
8 370 363 5.90E-190 –
Gene3D
G3DSA:2.130.10.10
174 224 51 1.80E-34
IPR015943
SMART
SM00320
183 222 40 5.80E-08
IPR001680
SUPERFAMILY
SSF50978
184 225 42 4.89E-31
IPR017986
Pfam
PF00400
188 222 35 2.20E-06
IPR001680
ProSiteProfiles
PS50082
190 231 42 14.753
IPR001680
ProSiteProfiles
PS50294
190 370 181 15.004
IPR017986
PRINTS
PR00320
209 223 15 1.40E-06
IPR020472
SMART
SM00320
287 325 39 1.70E-08
IPR001680
Gene3D
G3DSA:2.130.10.10
287 368 82 1.80E-34
IPR015943
SUPERFAMILY
SSF50978
288 368 81 4.89E-31
IPR017986
Pfam
PF00400
289 324 36 6.10E-07
IPR001680
ProSiteProfiles
PS50082
294 326 33 10.475
IPR001680
PRINTS
PR00320
312 326 15 1.40E-06
IPR020472
SMART
SM00320
328 367 40 7.60E-07
IPR001680
Pfam
PF00400
330 366 37 0.002
IPR001680
ProSiteProfiles
PS50082
334 370 37 12.28
IPR001680
PRINTS
PR00320
354 368 15 1.40E-06
IPR020472

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj4g3v3014540.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3014540.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.