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Lj4g3v3114720.1

Overview

Field Value
Gene ID Lj4g3v3114720
Transcript ID Lj4g3v3114720.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
SUPERFAMILY
SSF47473
23 66 44 7.96E-12
IPR011992
ProSiteProfiles
PS50222
26 61 36 15.601
IPR002048
PANTHER
PTHR10891
27 66 40 7.40E-14 –
PANTHER
PTHR10891:SF605
27 66 40 7.40E-14 –
Gene3D
G3DSA:1.10.238.10
27 66 40 7.10E-12
IPR011992
Pfam
PF13405
30 59 30 6.70E-09
IPR002048
CDD
cd00051
30 66 37 1.84E-08
IPR002048
SMART
SM00054
30 58 29 9.20E-06
IPR002048
ProSitePatterns
PS00018
39 51 13 –
IPR018247

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj4g3v3114720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3114720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.