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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3116180 |
| Transcript ID | Lj4g3v3116180.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: photosystem I reaction center subunit XI, chloroplastic-like [Cicer arietinum] gi|502105558|ref|XP_004492835.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 129 | 129 | – | – | |
| PANTHER | 1 | 215 | 215 | 8.20E-153 | – | |
| PANTHER | 1 | 215 | 215 | 8.20E-153 | – | |
| Gene3D | 55 | 213 | 159 | 1.70E-67 | ||
| Pfam | 57 | 209 | 153 | 7.20E-59 | ||
| ProDom | 58 | 205 | 148 | 1.00E-59 | ||
| SUPERFAMILY | 58 | 214 | 157 | 3.40E-55 | ||
| TMHMM | 129 | 151 | 23 | – | – | |
| Phobius | 130 | 151 | 22 | – | – | |
| Phobius | 152 | 189 | 38 | – | – | |
| TMHMM | 186 | 208 | 23 | – | – | |
| Phobius | 190 | 208 | 19 | – | – | |
| Phobius | 209 | 215 | 7 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Cellular component | Photosystem I reaction center | A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of Lj4g3v3116180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3116180.1, powered by CORGI.
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