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Lj5g3v0278020.1

Overview

Field	Value
Gene ID	Lj5g3v0278020
Transcript ID	Lj5g3v0278020.1
Lotus japonicus genome version	MG20 v3.0
Description	dehydrin 8 [Malus domestica] gi\|382948207\|gb\|AFG33218.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	233	233	–	–
PANTHER	PTHR33346:SF2 View details on PTHR33346:SF2 Search for proteins/transripts with this domain View external data on PTHR33346:SF2	47	220	174	1.20E-39	–
PANTHER	PTHR33346 View details on PTHR33346 Search for proteins/transripts with this domain View external data on PTHR33346	47	220	174	1.20E-39	–
Pfam	PF00257 View details on PF00257 Search for proteins/transripts with this domain View external data on PF00257	58	166	109	2.50E-17	IPR000167 Show description in modal box View details on IPR000167 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	83	103	21	–	–
ProSitePatterns	PS00823 View details on PS00823 Search for proteins/transripts with this domain View external data on PS00823	157	164	8	–	IPR030513 Show description in modal box View details on IPR030513 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00257 View details on PF00257 Search for proteins/transripts with this domain View external data on PF00257	182	217	36	5.90E-06	IPR000167 Show description in modal box View details on IPR000167 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00823 View details on PS00823 Search for proteins/transripts with this domain View external data on PS00823	208	215	8	–	IPR030513 Show description in modal box View details on IPR030513 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0009415 View details of GO:0009415 AmiGO InterPro QuickGO	Biological process	Response to water	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water.	Subterm of View details of GO:0001101 View details of GO:0009628 View details of GO:0010035 View details of GO:1901700

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0278020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0278020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.