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Lj5g3v0294900.1

Overview

Field Value
Gene ID Lj5g3v0294900
Transcript ID Lj5g3v0294900.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
1 358 358 1.20E-192 –
PANTHER
PTHR24006:SF481
1 358 358 1.20E-192 –
SUPERFAMILY
SSF52047
21 364 344 2.43E-40 –
Gene3D
G3DSA:3.80.10.10
23 239 217 3.90E-29
IPR032675
Pfam
PF13516
58 81 24 0.032
IPR001611
SMART
SM00367
58 83 26 2.30E-05
IPR006553
SMART
SM00367
84 108 25 91
IPR006553
SMART
SM00367
211 236 26 120
IPR006553
SMART
SM00367
237 264 28 66
IPR006553
Gene3D
G3DSA:3.80.10.10
240 386 147 1.70E-12
IPR032675
SMART
SM00367
265 289 25 290
IPR006553
SMART
SM00367
290 315 26 130
IPR006553
SMART
SM00367
316 340 25 6.60E-04
IPR006553
SMART
SM00367
341 368 28 460
IPR006553
MobiDBLite
mobidb-lite
381 427 47 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj5g3v0294900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0294900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.