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Lj5g3v0297300.1

Overview

Field Value
Gene ID Lj5g3v0297300
Transcript ID Lj5g3v0297300.1
Lotus japonicus genome version MG20 v3.0
Description cyclin A3.1 [Pisum sativum] gi|7242793|emb|CAB77269.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001771
1 341 341 4.00E-109 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 256 256 – –
MobiDBLite
mobidb-lite
37 75 39 – –
PANTHER
PTHR10177:SF100
67 345 279 1.00E-190
IPR029507
PANTHER
PTHR10177
67 345 279 1.00E-190 –
SUPERFAMILY
SSF47954
71 210 140 1.92E-47
IPR013763
Pfam
PF00134
82 210 129 6.90E-41
IPR006671
Gene3D
G3DSA:1.10.472.10
101 204 104 9.10E-46
IPR013763
CDD
cd00043
114 203 90 9.94E-20 –
ProSitePatterns
PS00292
115 146 32 –
IPR006671
SMART
SM00385
120 204 85 5.70E-24
IPR013763
Gene3D
G3DSA:1.10.472.10
205 340 136 1.00E-44
IPR013763
SUPERFAMILY
SSF47954
213 338 126 3.40E-36
IPR013763
SMART
SM01332
213 336 124 1.50E-37
IPR004367
CDD
cd00043
213 304 92 1.35E-13 –
Pfam
PF02984
213 335 123 1.70E-33
IPR004367
SMART
SM00385
217 305 89 5.40E-18
IPR013763
Phobius
TRANSMEMBRANE
257 274 18 – –
Phobius
CYTOPLASMIC_DOMAIN
275 351 77 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v0297300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0297300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.