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Lj5g3v0402730.1

Overview

Field	Value
Gene ID	Lj5g3v0402730
Transcript ID	Lj5g3v0402730.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi\|356552350\|ref\|XP_003544531.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	46	46	–	–
PANTHER	PTHR31342 View details on PTHR31342 Search for proteins/transripts with this domain View external data on PTHR31342	1	397	397	0	–
PANTHER	PTHR31342:SF11 View details on PTHR31342:SF11 Search for proteins/transripts with this domain View external data on PTHR31342:SF11	1	397	397	0	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	162	196	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	214	248	35	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	261	281	21	–	–
PANTHER	PTHR31342 View details on PTHR31342 Search for proteins/transripts with this domain View external data on PTHR31342	458	790	333	0	–
PANTHER	PTHR31342:SF11 View details on PTHR31342:SF11 Search for proteins/transripts with this domain View external data on PTHR31342:SF11	458	790	333	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	471	516	46	–	–
SUPERFAMILY	SSF101447 View details on SSF101447 Search for proteins/transripts with this domain View external data on SSF101447	500	510	11	4.45E-06	–
SUPERFAMILY	SSF101447 View details on SSF101447 Search for proteins/transripts with this domain View external data on SSF101447	586	606	21	4.45E-06	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj5g3v0402730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0402730.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.