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Lj5g3v0404820.1

Overview

Field Value
Gene ID Lj5g3v0404820
Transcript ID Lj5g3v0404820.1
Lotus japonicus genome version MG20 v3.0
Description GATA transcription factor [Medicago truncatula] gi|357437437|ref|XP_003588994.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10071
48 220 173 2.90E-44 –
PANTHER
PTHR10071:SF191
48 220 173 2.90E-44 –
MobiDBLite
mobidb-lite
130 175 46 – –
SUPERFAMILY
SSF57716
169 209 41 1.81E-12 –
SMART
SM00401
169 220 52 3.70E-16
IPR000679
ProSiteProfiles
PS50114
169 205 37 13.112
IPR000679
Gene3D
G3DSA:3.30.50.10
173 208 36 4.20E-15
IPR013088
CDD
cd00202
174 228 55 7.52E-13 –
Pfam
PF00320
175 208 34 4.00E-16
IPR000679
ProSitePatterns
PS00344
175 200 26 –
IPR000679
MobiDBLite
mobidb-lite
227 261 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj5g3v0404820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0404820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.