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Lj5g3v0409310.1

Overview

Field Value
Gene ID Lj5g3v0409310
Transcript ID Lj5g3v0409310.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Methyltransferase-like protein [Medicago truncatula] gi|357437371|ref|XP_003588961.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22809:SF1
22 271 250 1.00E-165 –
PANTHER
PTHR22809
22 271 250 1.00E-165
IPR026113
SUPERFAMILY
SSF53335
39 271 233 8.44E-33
IPR029063
Gene3D
G3DSA:3.40.50.150
45 260 216 7.30E-39
IPR029063
CDD
cd02440
87 191 105 2.39E-10 –
Pfam
PF08242
88 188 101 2.00E-13
IPR013217
Gene3D
G3DSA:3.40.50.150
350 534 185 5.00E-38
IPR029063
PANTHER
PTHR22809
350 414 65 1.00E-165
IPR026113
PANTHER
PTHR22809:SF1
350 414 65 1.00E-165 –
Pfam
PF10294
354 491 138 3.60E-14
IPR019410
SUPERFAMILY
SSF53335
361 492 132 6.78E-16
IPR029063
CDD
cd02440
386 493 108 3.93E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj5g3v0409310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0409310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.